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Metagenomic Analysis for Unveiling Agricultural Microbiome
Yong-Xin Liu (editor) and Peng Yu (editor)
2024
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Microbial communities play crucial roles in sustaining agricultural ecosystems, influencing both crop health and productivity. Microorganisms, particularly bacteria and fungi in the soil, are pivotal in the cycling of essential nutrients such as nitrogen, phosphorus and potassium. They convert these elements into forms that plants can readily absorb, thereby directly impacting soil fertility and plant nutrition. Soil microorganisms are also known to produce hormones and other biochemicals that promote plant growth. This biological control is instrumental in managing crop diseases and reducing dependency on chemical pesticides. Moreover, microorganisms play a critical role in helping plants cope with abiotic stresses, such as drought, salinity and extreme temperatures. Such biodiversity is essential for robust agricultural systems that need to adapt to and mitigate the impacts of climate change.
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Keywords
- 15N natural abundance
- Amaranthus spp.
- American ginseng
- Bacteria
- bacterial community
- bacterial community structure
- beneficial community
- Bradyrhizobium
- bulk soil
- carbon dioxide emission flux
- CH4 emission
- co-ensiling
- co-occurrence network
- co-occurrence networks
- Composition
- corn stalk
- crop rotation
- cropping system
- Cucumis sativus
- Cuscuta
- Diversity
- endophytic microbial community structure
- FAPROTAX and FUNGuild
- fermentation quality
- fertilization
- flavonoid metabolite
- fully mechanized cultivation
- functional group
- fungal community
- Fungi
- fungi diversity
- high-throughput sequencing
- intercropped soybean
- legume plant
- Loess Plateau
- Maize rotation
- Malus domestica
- manure
- Metagenomics
- methanogenic community
- methanotrophs
- microbial community
- microbiome
- microbiota
- microhabitats
- n/a
- next generation sequencing
- nitrogen cycling genes
- nitrogen fractions
- nitrogen-fixing bacteria
- nitrogen-fixing efficiency
- organic fertilizer
- Orobanche cumama
- paddy soil
- parasitism status
- peanut (Arachis hypogaea L.)
- phytoremediation
- qPCR
- rhizosphere
- rhizosphere bacterial diversity
- rhizosphere microbial
- rhizosphere microbial communities
- rhizosphere microbial community
- root-associated microbiome
- root-knot nematode
- root-knot nematode disease
- rotation cropping
- soil pH
- soil properties
- soil quality
- Streptomyces rochei
- Structure
- sugarcane
- sunflower
- technogenically contaminated soils
- the ratio of fungi to bacteria
- thema EDItEUR::P Mathematics and Science::PS Biology, life sciences
- transplanting
- whole-plant cassava
Links
DOI: 10.3390/books978-3-7258-1321-6Editions